PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG081800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 412aa    MW: 43989.9 Da    PI: 6.2594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG081800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.93.3e-17228274455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +++eY+ksLq
  Pavir.9NG081800.1.p 228 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 274
                          6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.88E-18220278No hitNo description
SuperFamilySSF474596.41E-21222288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.482224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-14228274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-21228283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDGNARPAAN QKKPIVTDDD LVELLWHNGS VVAQPQAHQR PAPSDRPGSS GLTGEETAAW  60
FPDTLDDALE KDLYTQLWYS SIIDAAPHHG DTLPGPSSPP PPPELAHPVT PPVGSSGVES  120
SWAGDICSTF YGSNQVPGMP AGVNRGKDAS FQSEVPHGAG AGTSSSGGSG SNYGGSGLPS  180
DSGHVQKGKG ICRDDSDSRS EDAECEATEE AKSSRRCGTK RRTRAAEVHN LSERRRRDRI  240
NEKMRALQEL IPHCNKTDKA SILDETIEYL KSLQMQVQIM WMTSGMAPMM FPGAHQFMSP  300
MALGMNSACV TQMSYMNLPL PNHIPLNSSP TMNPINSPSI ANQMQNVHLR EASNHFLHQG  360
GGQISVPQVP GTHVYGPEIP QAEQHNRILE VPASTVAATS RAGQLHTYGG A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219236KRRTRAAEVHNLSERRRR
2232237ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.150270.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981539.10.0PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_004981540.10.0PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_012704121.10.0PREDICTED: transcription factor PIF4-like isoform X1
TrEMBLK4AAB20.0K4AAB2_SETIT; Uncharacterized protein
STRINGSi035818m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.43e-36phytochrome interacting factor 3-like 6